high-resolution algorithmic mapping efforts Search Results


90
Dalsa corp high-resolution 64 pixel × 64 pixel ccd camera
High Resolution 64 Pixel × 64 Pixel Ccd Camera, supplied by Dalsa corp, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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JEOL jem 2100f high resolution transmission electron microscope
Jem 2100f High Resolution Transmission Electron Microscope, supplied by JEOL, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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PANalytical empyrean diffractometer
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CardioInsight Technologies Inc high resolution electrocardiographic mapping system ecvue
Multi‐panel plot showing a comparison between late gadolinium enhancement ( LGE ) derived scar from cardiac magnetic resonance ( CMR ) and areas of low voltage indicated scarred myocardium. A, LGE CMR in short axis showing areas of transmural hyperenhancement in the mid‐septum. B, Areas of LGE derived scar rendered onto on a 3‐D shell of the LV in RAO angulation. C, Areas of LGE displayed on a 16 segment bulls‐eye plot of the LV . D, The CARDIOINSIGHT ™ <t>electrocardiographic</t> mapping vest is applied to the thorax. E, Voltage thresholded CARDIOINSIGHT ™ electrocardiographic map in RAO angulation. Areas of <2mv are displayed in red. F, Areas of low voltage displayed on a 16 segment bulls‐eye plot of the LV
High Resolution Electrocardiographic Mapping System Ecvue, supplied by CardioInsight Technologies Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
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GeoEye LLC satellite imagery geoeye-1
Multi‐panel plot showing a comparison between late gadolinium enhancement ( LGE ) derived scar from cardiac magnetic resonance ( CMR ) and areas of low voltage indicated scarred myocardium. A, LGE CMR in short axis showing areas of transmural hyperenhancement in the mid‐septum. B, Areas of LGE derived scar rendered onto on a 3‐D shell of the LV in RAO angulation. C, Areas of LGE displayed on a 16 segment bulls‐eye plot of the LV . D, The CARDIOINSIGHT ™ <t>electrocardiographic</t> mapping vest is applied to the thorax. E, Voltage thresholded CARDIOINSIGHT ™ electrocardiographic map in RAO angulation. Areas of <2mv are displayed in red. F, Areas of low voltage displayed on a 16 segment bulls‐eye plot of the LV
Satellite Imagery Geoeye 1, supplied by GeoEye LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/high-resolution+algorithmic+mapping+efforts/geoeye+1/10__1002_slash_ppp__1810-2-15-22
Average 90 stars, based on 1 article reviews
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86
Spatial Transcriptomics Inc high resolution slide seq spatial transcriptomics map
Fig. 1 | Single-cell and spatial <t>transcriptomics</t> of cardiac and ileum tissue of reovirus-infected neonatal mice. a, Experiment and analysis workflow. Four- day-old neonatal mice weighing 3 g per pup were infected (per os) with reovirus T1L. Neonatal mice infected with 1× PBS were used as mock controls. Ileum tissue (1 dpi and 4 dpi) and heart tissues (4 dpi, 7 dpi and 10 dpi) were assayed and used for scRNA-seq and spatial transcriptomics. b, UMAP plot of 31,684 single-cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi (one animal per condition), clustered by gene expression and colored by cell type (left). UMAP plots showing cardiac cell type clusters across samples for the heart scRNA-seq data (right). c, 8,243 spatial transcriptomes of cardiac tissue sections from mock-infected and reovirus-infected mice at 4 dpi and 7 dpi (one animal per condition). H&E-stained image of reovirus-infected myocarditic
High Resolution Slide Seq Spatial Transcriptomics Map, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/high-resolution+algorithmic+mapping+efforts/seq+slide/pm36970396-158-20-22
Average 86 stars, based on 1 article reviews
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TESCAN USA Inc integrated mineral analyser tima field emission gun feg sem
Fig. 1 | Single-cell and spatial <t>transcriptomics</t> of cardiac and ileum tissue of reovirus-infected neonatal mice. a, Experiment and analysis workflow. Four- day-old neonatal mice weighing 3 g per pup were infected (per os) with reovirus T1L. Neonatal mice infected with 1× PBS were used as mock controls. Ileum tissue (1 dpi and 4 dpi) and heart tissues (4 dpi, 7 dpi and 10 dpi) were assayed and used for scRNA-seq and spatial transcriptomics. b, UMAP plot of 31,684 single-cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi (one animal per condition), clustered by gene expression and colored by cell type (left). UMAP plots showing cardiac cell type clusters across samples for the heart scRNA-seq data (right). c, 8,243 spatial transcriptomes of cardiac tissue sections from mock-infected and reovirus-infected mice at 4 dpi and 7 dpi (one animal per condition). H&E-stained image of reovirus-infected myocarditic
Integrated Mineral Analyser Tima Field Emission Gun Feg Sem, supplied by TESCAN USA Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/high-resolution+algorithmic+mapping+efforts/TIMA/10__1007_slash_s00410___025___02250___4-89-11-10
Average 99 stars, based on 1 article reviews
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OpGen Inc whole-genome optical nhei restriction map
Fig. 1 | Single-cell and spatial <t>transcriptomics</t> of cardiac and ileum tissue of reovirus-infected neonatal mice. a, Experiment and analysis workflow. Four- day-old neonatal mice weighing 3 g per pup were infected (per os) with reovirus T1L. Neonatal mice infected with 1× PBS were used as mock controls. Ileum tissue (1 dpi and 4 dpi) and heart tissues (4 dpi, 7 dpi and 10 dpi) were assayed and used for scRNA-seq and spatial transcriptomics. b, UMAP plot of 31,684 single-cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi (one animal per condition), clustered by gene expression and colored by cell type (left). UMAP plots showing cardiac cell type clusters across samples for the heart scRNA-seq data (right). c, 8,243 spatial transcriptomes of cardiac tissue sections from mock-infected and reovirus-infected mice at 4 dpi and 7 dpi (one animal per condition). H&E-stained image of reovirus-infected myocarditic
Whole Genome Optical Nhei Restriction Map, supplied by OpGen Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/high-resolution+algorithmic+mapping+efforts/whole+genome+optical+mapping/pmc03751602-9-17-28
Average 90 stars, based on 1 article reviews
whole-genome optical nhei restriction map - by Bioz Stars, 2026-10
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NimbleGen Systems GmbH custom high-resolution oligonucleotide array
Fig. 1 | Single-cell and spatial <t>transcriptomics</t> of cardiac and ileum tissue of reovirus-infected neonatal mice. a, Experiment and analysis workflow. Four- day-old neonatal mice weighing 3 g per pup were infected (per os) with reovirus T1L. Neonatal mice infected with 1× PBS were used as mock controls. Ileum tissue (1 dpi and 4 dpi) and heart tissues (4 dpi, 7 dpi and 10 dpi) were assayed and used for scRNA-seq and spatial transcriptomics. b, UMAP plot of 31,684 single-cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi (one animal per condition), clustered by gene expression and colored by cell type (left). UMAP plots showing cardiac cell type clusters across samples for the heart scRNA-seq data (right). c, 8,243 spatial transcriptomes of cardiac tissue sections from mock-infected and reovirus-infected mice at 4 dpi and 7 dpi (one animal per condition). H&E-stained image of reovirus-infected myocarditic
Custom High Resolution Oligonucleotide Array, supplied by NimbleGen Systems GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/high-resolution+algorithmic+mapping+efforts/oligonucleotide+arrays/pmc03395372-104-10-14
Average 90 stars, based on 1 article reviews
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GeoEye LLC general high resolution satellite image map
Fig. 1 | Single-cell and spatial <t>transcriptomics</t> of cardiac and ileum tissue of reovirus-infected neonatal mice. a, Experiment and analysis workflow. Four- day-old neonatal mice weighing 3 g per pup were infected (per os) with reovirus T1L. Neonatal mice infected with 1× PBS were used as mock controls. Ileum tissue (1 dpi and 4 dpi) and heart tissues (4 dpi, 7 dpi and 10 dpi) were assayed and used for scRNA-seq and spatial transcriptomics. b, UMAP plot of 31,684 single-cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi (one animal per condition), clustered by gene expression and colored by cell type (left). UMAP plots showing cardiac cell type clusters across samples for the heart scRNA-seq data (right). c, 8,243 spatial transcriptomes of cardiac tissue sections from mock-infected and reovirus-infected mice at 4 dpi and 7 dpi (one animal per condition). H&E-stained image of reovirus-infected myocarditic
General High Resolution Satellite Image Map, supplied by GeoEye LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/high-resolution+algorithmic+mapping+efforts/general+high+resolution+satellite+image+map/pm31677432-52-9-17
Average 90 stars, based on 1 article reviews
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BioNano Genomics bionano irys system
Fig. 1 | Single-cell and spatial <t>transcriptomics</t> of cardiac and ileum tissue of reovirus-infected neonatal mice. a, Experiment and analysis workflow. Four- day-old neonatal mice weighing 3 g per pup were infected (per os) with reovirus T1L. Neonatal mice infected with 1× PBS were used as mock controls. Ileum tissue (1 dpi and 4 dpi) and heart tissues (4 dpi, 7 dpi and 10 dpi) were assayed and used for scRNA-seq and spatial transcriptomics. b, UMAP plot of 31,684 single-cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi (one animal per condition), clustered by gene expression and colored by cell type (left). UMAP plots showing cardiac cell type clusters across samples for the heart scRNA-seq data (right). c, 8,243 spatial transcriptomes of cardiac tissue sections from mock-infected and reovirus-infected mice at 4 dpi and 7 dpi (one animal per condition). H&E-stained image of reovirus-infected myocarditic
Bionano Irys System, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/high-resolution+algorithmic+mapping+efforts/bionano+irys+system/pmc06553538-88-13-12
Average 90 stars, based on 1 article reviews
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CardioInsight Technologies Inc electrocardiographic mapping system
Fig. 1 | Single-cell and spatial <t>transcriptomics</t> of cardiac and ileum tissue of reovirus-infected neonatal mice. a, Experiment and analysis workflow. Four- day-old neonatal mice weighing 3 g per pup were infected (per os) with reovirus T1L. Neonatal mice infected with 1× PBS were used as mock controls. Ileum tissue (1 dpi and 4 dpi) and heart tissues (4 dpi, 7 dpi and 10 dpi) were assayed and used for scRNA-seq and spatial transcriptomics. b, UMAP plot of 31,684 single-cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi (one animal per condition), clustered by gene expression and colored by cell type (left). UMAP plots showing cardiac cell type clusters across samples for the heart scRNA-seq data (right). c, 8,243 spatial transcriptomes of cardiac tissue sections from mock-infected and reovirus-infected mice at 4 dpi and 7 dpi (one animal per condition). H&E-stained image of reovirus-infected myocarditic
Electrocardiographic Mapping System, supplied by CardioInsight Technologies Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/high-resolution+algorithmic+mapping+efforts/non+contact+cardiac+mapping+system/pmc07857455-58-8-13
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Image Search Results


Multi‐panel plot showing a comparison between late gadolinium enhancement ( LGE ) derived scar from cardiac magnetic resonance ( CMR ) and areas of low voltage indicated scarred myocardium. A, LGE CMR in short axis showing areas of transmural hyperenhancement in the mid‐septum. B, Areas of LGE derived scar rendered onto on a 3‐D shell of the LV in RAO angulation. C, Areas of LGE displayed on a 16 segment bulls‐eye plot of the LV . D, The CARDIOINSIGHT ™ electrocardiographic mapping vest is applied to the thorax. E, Voltage thresholded CARDIOINSIGHT ™ electrocardiographic map in RAO angulation. Areas of <2mv are displayed in red. F, Areas of low voltage displayed on a 16 segment bulls‐eye plot of the LV

Journal: Journal of Arrhythmia

Article Title: Optimization of CRT programming using non‐invasive electrocardiographic imaging to assess the acute electrical effects of multipoint pacing

doi: 10.1002/joa3.12153

Figure Lengend Snippet: Multi‐panel plot showing a comparison between late gadolinium enhancement ( LGE ) derived scar from cardiac magnetic resonance ( CMR ) and areas of low voltage indicated scarred myocardium. A, LGE CMR in short axis showing areas of transmural hyperenhancement in the mid‐septum. B, Areas of LGE derived scar rendered onto on a 3‐D shell of the LV in RAO angulation. C, Areas of LGE displayed on a 16 segment bulls‐eye plot of the LV . D, The CARDIOINSIGHT ™ electrocardiographic mapping vest is applied to the thorax. E, Voltage thresholded CARDIOINSIGHT ™ electrocardiographic map in RAO angulation. Areas of <2mv are displayed in red. F, Areas of low voltage displayed on a 16 segment bulls‐eye plot of the LV

Article Snippet: A non‐invasive electrophysiological mapping study was performed using a high resolution electrocardiographic mapping system (ECVUE, CardioInsight Technologies Inc. Medtronic), as previously described.

Techniques: Comparison, Derivative Assay

Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 1. A voltage map thresholded to 2mv is shown with a still from the CMR short axis stack ( SAX )

Journal: Journal of Arrhythmia

Article Title: Optimization of CRT programming using non‐invasive electrocardiographic imaging to assess the acute electrical effects of multipoint pacing

doi: 10.1002/joa3.12153

Figure Lengend Snippet: Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 1. A voltage map thresholded to 2mv is shown with a still from the CMR short axis stack ( SAX )

Article Snippet: A non‐invasive electrophysiological mapping study was performed using a high resolution electrocardiographic mapping system (ECVUE, CardioInsight Technologies Inc. Medtronic), as previously described.

Techniques: Activation Assay

Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 2. A voltage map thresholded to 2mv is shown with a still from the CMR short axis stack ( SAX )

Journal: Journal of Arrhythmia

Article Title: Optimization of CRT programming using non‐invasive electrocardiographic imaging to assess the acute electrical effects of multipoint pacing

doi: 10.1002/joa3.12153

Figure Lengend Snippet: Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 2. A voltage map thresholded to 2mv is shown with a still from the CMR short axis stack ( SAX )

Article Snippet: A non‐invasive electrophysiological mapping study was performed using a high resolution electrocardiographic mapping system (ECVUE, CardioInsight Technologies Inc. Medtronic), as previously described.

Techniques: Activation Assay

Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 3. A voltage map thresholded to 2mv is shown

Journal: Journal of Arrhythmia

Article Title: Optimization of CRT programming using non‐invasive electrocardiographic imaging to assess the acute electrical effects of multipoint pacing

doi: 10.1002/joa3.12153

Figure Lengend Snippet: Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 3. A voltage map thresholded to 2mv is shown

Article Snippet: A non‐invasive electrophysiological mapping study was performed using a high resolution electrocardiographic mapping system (ECVUE, CardioInsight Technologies Inc. Medtronic), as previously described.

Techniques: Activation Assay

Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 4. A voltage map thresholded to 2mv is shown with a still from the CMR short axis stack ( SAX )

Journal: Journal of Arrhythmia

Article Title: Optimization of CRT programming using non‐invasive electrocardiographic imaging to assess the acute electrical effects of multipoint pacing

doi: 10.1002/joa3.12153

Figure Lengend Snippet: Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 4. A voltage map thresholded to 2mv is shown with a still from the CMR short axis stack ( SAX )

Article Snippet: A non‐invasive electrophysiological mapping study was performed using a high resolution electrocardiographic mapping system (ECVUE, CardioInsight Technologies Inc. Medtronic), as previously described.

Techniques: Activation Assay

Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 5

Journal: Journal of Arrhythmia

Article Title: Optimization of CRT programming using non‐invasive electrocardiographic imaging to assess the acute electrical effects of multipoint pacing

doi: 10.1002/joa3.12153

Figure Lengend Snippet: Electrocardiographic activation metrics and directional activation maps during device optimization of Patient 5

Article Snippet: A non‐invasive electrophysiological mapping study was performed using a high resolution electrocardiographic mapping system (ECVUE, CardioInsight Technologies Inc. Medtronic), as previously described.

Techniques: Activation Assay

Fig. 1 | Single-cell and spatial transcriptomics of cardiac and ileum tissue of reovirus-infected neonatal mice. a, Experiment and analysis workflow. Four- day-old neonatal mice weighing 3 g per pup were infected (per os) with reovirus T1L. Neonatal mice infected with 1× PBS were used as mock controls. Ileum tissue (1 dpi and 4 dpi) and heart tissues (4 dpi, 7 dpi and 10 dpi) were assayed and used for scRNA-seq and spatial transcriptomics. b, UMAP plot of 31,684 single-cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi (one animal per condition), clustered by gene expression and colored by cell type (left). UMAP plots showing cardiac cell type clusters across samples for the heart scRNA-seq data (right). c, 8,243 spatial transcriptomes of cardiac tissue sections from mock-infected and reovirus-infected mice at 4 dpi and 7 dpi (one animal per condition). H&E-stained image of reovirus-infected myocarditic

Journal: Nature cardiovascular research

Article Title: Spatiotemporal transcriptomics reveals pathogenesis of viral myocarditis.

doi: 10.1038/s44161-022-00138-1

Figure Lengend Snippet: Fig. 1 | Single-cell and spatial transcriptomics of cardiac and ileum tissue of reovirus-infected neonatal mice. a, Experiment and analysis workflow. Four- day-old neonatal mice weighing 3 g per pup were infected (per os) with reovirus T1L. Neonatal mice infected with 1× PBS were used as mock controls. Ileum tissue (1 dpi and 4 dpi) and heart tissues (4 dpi, 7 dpi and 10 dpi) were assayed and used for scRNA-seq and spatial transcriptomics. b, UMAP plot of 31,684 single-cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi (one animal per condition), clustered by gene expression and colored by cell type (left). UMAP plots showing cardiac cell type clusters across samples for the heart scRNA-seq data (right). c, 8,243 spatial transcriptomes of cardiac tissue sections from mock-infected and reovirus-infected mice at 4 dpi and 7 dpi (one animal per condition). H&E-stained image of reovirus-infected myocarditic

Article Snippet: UMAP plot showing the expression of myocyte-specific genes that are upregulated in the border zone of myocarditic regions (right). g, High-resolution Slide-seq spatial transcriptomics map of cardiac ventricular tissue from reovirus infected mice at 7 dpi colored by Slide-seq bead clusters.

Techniques: Infection, Gene Expression, Staining

Fig. 3 | Cytotoxic T cells recruited by inflamed endothelial cells induce pyroptosis in myocarditic tissue. a, UMAP plot of 9,786 single-cell endothelial cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi colored by endothelial cell subtype clusters (phenotypes) (top) and condition (bottom). b, Heat map showing top five differentially expressed genes (two-sided Wilcoxon test, log fold change > 1.0 and P < 0.01) for endothelial cell subtypes. c, UMAP plot showing the expression of genes upregulated in Cxcl9-high endothelial cells. d, Spatial transcriptomic maps of cardiac tissue from reovirus infected hearts at 7 dpi showing gene module scores calculated for four GO terms enriched in Cxcl9-high endothelial cells. e, UMAP plot of 2,205 single-cell T cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi colored by T cell subtype clusters (top) and condition (bottom). f, Heat map showing top five differentially expressed genes (two-sided Wilcoxon test, log fold change > 1.0 and P < 0.01) for T cell subtypes. g, UMAP plot showing the expression of genes upregulated in cytotoxic T cells from myocarditic heart at 7 dpi. h, Spatial transcriptomics maps of cardiac tissue from reovirus infected hearts at 7 dpi

Journal: Nature cardiovascular research

Article Title: Spatiotemporal transcriptomics reveals pathogenesis of viral myocarditis.

doi: 10.1038/s44161-022-00138-1

Figure Lengend Snippet: Fig. 3 | Cytotoxic T cells recruited by inflamed endothelial cells induce pyroptosis in myocarditic tissue. a, UMAP plot of 9,786 single-cell endothelial cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi colored by endothelial cell subtype clusters (phenotypes) (top) and condition (bottom). b, Heat map showing top five differentially expressed genes (two-sided Wilcoxon test, log fold change > 1.0 and P < 0.01) for endothelial cell subtypes. c, UMAP plot showing the expression of genes upregulated in Cxcl9-high endothelial cells. d, Spatial transcriptomic maps of cardiac tissue from reovirus infected hearts at 7 dpi showing gene module scores calculated for four GO terms enriched in Cxcl9-high endothelial cells. e, UMAP plot of 2,205 single-cell T cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi colored by T cell subtype clusters (top) and condition (bottom). f, Heat map showing top five differentially expressed genes (two-sided Wilcoxon test, log fold change > 1.0 and P < 0.01) for T cell subtypes. g, UMAP plot showing the expression of genes upregulated in cytotoxic T cells from myocarditic heart at 7 dpi. h, Spatial transcriptomics maps of cardiac tissue from reovirus infected hearts at 7 dpi

Article Snippet: UMAP plot showing the expression of myocyte-specific genes that are upregulated in the border zone of myocarditic regions (right). g, High-resolution Slide-seq spatial transcriptomics map of cardiac ventricular tissue from reovirus infected mice at 7 dpi colored by Slide-seq bead clusters.

Techniques: Infection, Expressing

Fig. 4 | Myocarditic regions and the border zone have distinct transcriptomic profiles and cell-type-specific signatures. a, Spatial transcriptomics map of cardiac tissue section from reovirus-infected mice at 7 dpi colored by spot clusters representing transcriptionally distinct tissue regions. b, Spatial transcriptomics maps of cardiac tissue sections from reovirus-infected mice at 7 dpi showing the expression of differentially expressed genes of interest in the myocarditic and the border zone. c, Changes in average predicted cell type proportions across the infected ventricle, for cell types enriched in the myocarditic region and the border zone. d, UMAP plot of 502 single-cell cardiomyocyte cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi colored by myocyte cell subtype (phenotypes) (left) and condition (right). e, Heat map showing the top five differentially expressed genes (two-sided Wilcoxon test, log fold change > 1.0 and P < 0.01) for cardiomyocyte cell subtypes. f, Venn diagram showing myocyte-specific genes

Journal: Nature cardiovascular research

Article Title: Spatiotemporal transcriptomics reveals pathogenesis of viral myocarditis.

doi: 10.1038/s44161-022-00138-1

Figure Lengend Snippet: Fig. 4 | Myocarditic regions and the border zone have distinct transcriptomic profiles and cell-type-specific signatures. a, Spatial transcriptomics map of cardiac tissue section from reovirus-infected mice at 7 dpi colored by spot clusters representing transcriptionally distinct tissue regions. b, Spatial transcriptomics maps of cardiac tissue sections from reovirus-infected mice at 7 dpi showing the expression of differentially expressed genes of interest in the myocarditic and the border zone. c, Changes in average predicted cell type proportions across the infected ventricle, for cell types enriched in the myocarditic region and the border zone. d, UMAP plot of 502 single-cell cardiomyocyte cell transcriptomes from mock-infected and reovirus-infected hearts at 4 dpi, 7 dpi and 10 dpi colored by myocyte cell subtype (phenotypes) (left) and condition (right). e, Heat map showing the top five differentially expressed genes (two-sided Wilcoxon test, log fold change > 1.0 and P < 0.01) for cardiomyocyte cell subtypes. f, Venn diagram showing myocyte-specific genes

Article Snippet: UMAP plot showing the expression of myocyte-specific genes that are upregulated in the border zone of myocarditic regions (right). g, High-resolution Slide-seq spatial transcriptomics map of cardiac ventricular tissue from reovirus infected mice at 7 dpi colored by Slide-seq bead clusters.

Techniques: Infection, Expressing